BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034D09LP1|AL429897
(801 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig767 596 e-170
3x_Contig1000 521 e-147
>3x_Contig767
Length = 1770
Score = 596 bits (300), Expect = e-170
Identities = 311/314 (99%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 488 ataaacagactattgggatggtttattggagaagaaacaaccaatcaagtgacgcattta 547
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 1770 ataaacagactattgggatg-tttattggagaagaaacaaccaaacaagtgacgcattta 1712
Query: 548 caattaataaaaatgaacaaggaaaaaggacggtttatgcttttgatgaaatttaaggaa 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 caattaataaaaatgaacaaggaaaaaggacggtttatgcttttgatgaaatttaaggaa 1652
Query: 608 caaagcttggcgaaagagtttcagaagctcttcgatgggaagaagttcaatgaaattgat 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 caaagcttggcgaaagagtttcagaagctcttcgatgggaagaagttcaatgaaattgat 1592
Query: 668 ccagaaacatgtcatgtggtagcaattaaggagcttatatttcatcaaggaatgtttagt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 ccagaaacatgtcatgtggtagcaattaaggagcttatatttcatcaaggaatgtttagt 1532
Query: 728 gaagataaagatgctctcccctacatgttaaaatatccgtttactcagagtagttcagaa 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 gaagataaagatgctctcccctacatgttaaaatatccgtttactcagagtagttcagaa 1472
Query: 788 maatctgatggttt 801
|||||||||||||
Sbjct: 1471 caatctgatggttt 1458
>3x_Contig1000
Length = 4837
Score = 521 bits (262), Expect = e-147
Identities = 274/278 (98%), Gaps = 1/278 (0%)
Strand = Plus / Minus
Query: 1 gatcgtttttttttccattcttcctttggcaggttctcatcccgattgttgatattccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gatcgtttttttttccattcttcctttggcaggttctcatcccgattgttgatattccta 220
Query: 61 gggatgagatgactactggcaacagctaatatgacgccaagaggcgaaccttcgtacaam 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gggatgagatgactactggcaacagctaatatgacgccaagaggcgaaccttcgtacaac 160
Query: 121 cagaaaamtttacattttgcctactagttacctgtcgggtctaagaataatccatatgga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cagaaaactttacattttgcctactagttacctgtcgggtctaagaataatccatatgga 100
Query: 181 atatacattacttatcgaggtaacagaaagtctagacgattgttataagttttttaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atatacattacttatcgaggtaacagaaagtctagacgattgttataagttttttaagtc 40
Query: 241 tggcaaattgacttttgagcggaag-actgattctcgt 277
||||||||||| ||||||||||||| ||||||||||||
Sbjct: 39 tggcaaattgaattttgagcggaagtactgattctcgt 2
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6563
Number of Sequences: 1807
Number of extensions: 6563
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 801
length of database: 10,358,551
effective HSP length: 16
effective length of query: 785
effective length of database: 10,329,639
effective search space: 8108766615
effective search space used: 8108766615
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)